IL_5VP2_124
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 5VP2|1|1a|U|244, 5VP2|1|1a|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_124 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0839
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5VP2|1|1a|C|242
5VP2|1|1a|A|243
5VP2|1|1a|U|244
5VP2|1|1a|C|245
5VP2|1|1a|A|246
5VP2|1|1a|G|247
*
5VP2|1|1a|C|277
5VP2|1|1a|G|278
5VP2|1|1a|A|279
5VP2|1|1a|C|280
5VP2|1|1a|G|281
5VP2|1|1a|A|282
5VP2|1|1a|C|283
5VP2|1|1a|G|284
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
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