IL_5VYC_028
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_028 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1107
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5VYC|1|i1|C|676
5VYC|1|i1|G|677
5VYC|1|i1|U|678
5VYC|1|i1|A|679
5VYC|1|i1|G|680
*
5VYC|1|i1|U|1025
5VYC|1|i1|C|1026
5VYC|1|i1|A|1027
5VYC|1|i1|A|1028
5VYC|1|i1|G|1029
Current chains
- Chain i1
- Human 18S ribosomal RNA
Nearby chains
- Chain L1
- 40S ribosomal protein S11
- Chain N1
- 40S ribosomal protein S13
- Chain W1
- 40S ribosomal protein S15a
- Chain X1
- 40S ribosomal protein S23
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