IL_5VYC_038
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_038 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.1737
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5VYC|1|i1|C|1047
5VYC|1|i1|G|1048
5VYC|1|i1|A|1049
5VYC|1|i1|A|1050
5VYC|1|i1|G|1051
*
5VYC|1|i1|C|1067
5VYC|1|i1|G|1068
5VYC|1|i1|U|1069
5VYC|1|i1|A|1070
5VYC|1|i1|G|1071
Current chains
- Chain i1
- Human 18S ribosomal RNA
Nearby chains
- Chain O1
- 40S ribosomal protein S14
- Chain a1
- 40S ribosomal protein S26
- Chain k1
- Malignant T-cell-amplified sequence 1
- Chain l1
- Density-regulated protein
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