IL_5VYC_184
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5VYC|1|i3|C|1215, 5VYC|1|i3|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_184 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1546
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5VYC|1|i3|A|1214
5VYC|1|i3|C|1215
5VYC|1|i3|C|1216
5VYC|1|i3|A|1217
*
5VYC|1|i3|U|1681
5VYC|1|i3|C|1682
5VYC|1|i3|C|1683
5VYC|1|i3|C|1684
5VYC|1|i3|U|1685
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain F3
- 40S ribosomal protein S5
- Chain Q3
- 40S ribosomal protein S16
- Chain c3
- 40S ribosomal protein S28
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