IL_5VYC_215
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UACGCAC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 5VYC|1|i4|C|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_215 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.3619
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.2
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
5VYC|1|i4|U|63
5VYC|1|i4|A|64
5VYC|1|i4|C|65
5VYC|1|i4|G|66
5VYC|1|i4|C|67
5VYC|1|i4|A|68
5VYC|1|i4|C|69
*
5VYC|1|i4|G|80
5VYC|1|i4|U|81
5VYC|1|i4|G|82
5VYC|1|i4|A|83
5VYC|1|i4|A|84
5VYC|1|i4|A|85
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain G4
- 40S ribosomal protein S6
- Chain Y4
- 40S ribosomal protein S24
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