IL_5VYC_218

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

5VYC|1|i4|G|113, 5VYC|1|i4|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_218 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2114

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5VYC|1|i4|U|112
5VYC|1|i4|G|113
5VYC|1|i4|G|114
5VYC|1|i4|U|115
*
5VYC|1|i4|A|348
5VYC|1|i4|A|349

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain E4

40S ribosomal protein S4, X isoform

Chain I4

40S ribosomal protein S8

Chain L4

40S ribosomal protein S11