IL_5VYC_223
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 5VYC|1|i4|U|361, 5VYC|1|i4|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_223 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.198
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5VYC|1|i4|U|359
5VYC|1|i4|A|360
5VYC|1|i4|U|361
5VYC|1|i4|C|362
5VYC|1|i4|A|363
5VYC|1|i4|A|364
*
5VYC|1|i4|U|396
5VYC|1|i4|G|397
5VYC|1|i4|A|398
5VYC|1|i4|C|399
5VYC|1|i4|C|400
5VYC|1|i4|A|401
5VYC|1|i4|C|402
5VYC|1|i4|G|403
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain I4
- 40S ribosomal protein S8
- Chain L4
- 40S ribosomal protein S11
- Chain X4
- 40S ribosomal protein S23
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