IL_5VYC_259
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 5VYC|1|i4|C|1493, 5VYC|1|i4|U|1494, 5VYC|1|i4|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_259 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.2198
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i4|U|1333
5VYC|1|i4|G|1334
5VYC|1|i4|G|1335
*
5VYC|1|i4|U|1492
5VYC|1|i4|C|1493
5VYC|1|i4|U|1494
5VYC|1|i4|G|1495
5VYC|1|i4|U|1496
5VYC|1|i4|G|1497
5VYC|1|i4|A|1498
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain D4
- 40S ribosomal protein S3
- Chain K4
- 40S ribosomal protein S10
- Chain U4
- 40S ribosomal protein S20
- Chain d4
- 40S ribosomal protein S29
- Chain f4
- Ribosomal protein S27a
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