IL_5VYC_409

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_409 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2039

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5VYC|1|i6|C|1713
5VYC|1|i6|U|1714
5VYC|1|i6|A|1715
5VYC|1|i6|C|1716
*
5VYC|1|i6|G|1817
5VYC|1|i6|A|1818
5VYC|1|i6|A|1819
5VYC|1|i6|G|1820

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain X6

40S ribosomal protein S23

Chain j6

60S ribosomal protein L41

Chain l6

Density-regulated protein