IL_5VYC_476
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5VYC|1|i5|C|1331, 5VYC|1|i5|U|1494, 5VYC|1|i5|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_476 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.2604
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5VYC|1|i5|U|1329
5VYC|1|i5|G|1330
5VYC|1|i5|C|1331
5VYC|1|i5|A|1332
5VYC|1|i5|U|1333
5VYC|1|i5|G|1334
5VYC|1|i5|G|1335
*
5VYC|1|i5|U|1492
5VYC|1|i5|C|1493
5VYC|1|i5|U|1494
5VYC|1|i5|G|1495
5VYC|1|i5|U|1496
5VYC|1|i5|G|1497
5VYC|1|i5|A|1498
5VYC|1|i5|U|1499
5VYC|1|i5|G|1500
Current chains
- Chain i5
- Human 18S ribosomal RNA
Nearby chains
- Chain D5
- 40S ribosomal protein S3
- Chain K5
- 40S ribosomal protein S10
- Chain U5
- 40S ribosomal protein S20
- Chain d5
- 40S ribosomal protein S29
- Chain f5
- Ribosomal protein S27a
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