IL_5VYC_524

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_524 not in the Motif Atlas

Homologous match to IL_8P9A_421

Geometric discrepancy: 0.1734

The information below is about IL_8P9A_421

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5VYC|1|i6|G|942
5VYC|1|i6|U|943
5VYC|1|i6|A|944
5VYC|1|i6|U|945
*
5VYC|1|i6|A|981
5VYC|1|i6|G|982
5VYC|1|i6|A|983
5VYC|1|i6|C|984

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain B6

40S ribosomal protein S3a

Chain O6

40S ribosomal protein S14