IL_5WYJ_045

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

5WYJ|1|SA|U|313, 5WYJ|1|SA|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_045 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1808

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5WYJ|1|SA|U|311
5WYJ|1|SA|A|312
5WYJ|1|SA|U|313
5WYJ|1|SA|C|314
5WYJ|1|SA|A|315
5WYJ|1|SA|A|316
*
5WYJ|1|SA|U|348
5WYJ|1|SA|U|349
5WYJ|1|SA|U|350
5WYJ|1|SA|C|351
5WYJ|1|SA|A|352
5WYJ|1|SA|A|353
5WYJ|1|SA|C|354
5WYJ|1|SA|G|355

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A