IL_5WYJ_056

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_056 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.1865

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5WYJ|1|SA|C|627
5WYJ|1|SA|G|628
5WYJ|1|SA|U|629
5WYJ|1|SA|A|630
5WYJ|1|SA|G|631
*
5WYJ|1|SA|U|968
5WYJ|1|SA|C|969
5WYJ|1|SA|A|970
5WYJ|1|SA|A|971
5WYJ|1|SA|G|972

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SO

40S ribosomal protein S13

Chain SX

40S ribosomal protein S22-A