IL_5WYJ_060

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

5WYJ|1|SA|G|876

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_060 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2213

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5WYJ|1|SA|C|874
5WYJ|1|SA|G|875
5WYJ|1|SA|G|876
5WYJ|1|SA|G|877
5WYJ|1|SA|G|878
*
5WYJ|1|SA|C|950
5WYJ|1|SA|A|951
5WYJ|1|SA|A|952
5WYJ|1|SA|G|953

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain K1

KRR1 small subunit processome component

Chain SC

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S13