IL_5WYJ_061

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_061 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.215

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5WYJ|1|SA|G|885
5WYJ|1|SA|U|886
5WYJ|1|SA|A|887
5WYJ|1|SA|U|888
*
5WYJ|1|SA|A|924
5WYJ|1|SA|G|925
5WYJ|1|SA|A|926
5WYJ|1|SA|C|927

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S1-A

Chain SP

40S ribosomal protein S14-A