IL_5WYK_003

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_003 not in the Motif Atlas

Geometric match to IL_5E81_371

Geometric discrepancy: 0.1702

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5WYK|1|3A|A|48
5WYK|1|3A|C|49
5WYK|1|3A|U|50
*
5WYK|1|5A|A|468
5WYK|1|5A|C|469
5WYK|1|5A|U|470

Current chains

Chain 3A

U3 RNA

Chain 5A

5ETS RNA

Nearby chains

Chain U1

Utp7