IL_5WYK_035

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_035 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.301

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5WYK|1|SA|U|113
5WYK|1|SA|C|114
5WYK|1|SA|G|115
5WYK|1|SA|U|116
*
5WYK|1|SA|A|300
5WYK|1|SA|A|301

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A