IL_5Z3G_017
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GUUUU*AUUUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z3G_017 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.2364
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5Z3G|1|A|G|445
5Z3G|1|A|U|446
5Z3G|1|A|U|447
5Z3G|1|A|U|448
5Z3G|1|A|U|449
*
5Z3G|1|A|A|485
5Z3G|1|A|U|486
5Z3G|1|A|U|487
5Z3G|1|A|U|488
5Z3G|1|A|C|489
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L6-A
- Chain O
- Ribosome production factor 1
- Chain V
- Ribosome biogenesis protein NSA1
- Chain Z
- Protein MAK16
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