IL_5Z3G_022

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

5Z3G|1|A|U|534, 5Z3G|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_022 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1277

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5Z3G|1|A|G|531
5Z3G|1|A|A|532
5Z3G|1|A|A|533
5Z3G|1|A|U|534
5Z3G|1|A|G|535
5Z3G|1|A|U|536
5Z3G|1|A|A|537
5Z3G|1|A|G|538
*
5Z3G|1|A|U|553
5Z3G|1|A|A|554
5Z3G|1|A|U|555
5Z3G|1|A|U|556
5Z3G|1|A|A|557
5Z3G|1|A|U|558
5Z3G|1|A|A|559
5Z3G|1|A|G|560
5Z3G|1|A|C|561

Current chains

Chain A

25S rRNA

Nearby chains

Chain Q

60S ribosomal protein L14-A

Chain W

60S ribosomal protein L20-A