IL_5Z3G_044

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

5Z3G|1|A|A|3142, 5Z3G|1|A|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_044 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1652

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5Z3G|1|A|C|3004
5Z3G|1|A|A|3005
5Z3G|1|A|A|3006
5Z3G|1|A|U|3007
*
5Z3G|1|A|A|3139
5Z3G|1|A|G|3140
5Z3G|1|A|A|3141
5Z3G|1|A|A|3142
5Z3G|1|A|C|3143
5Z3G|1|A|G|3144

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

5.8S ribosomal RNA; 5.8S rRNA

Chain F

60S ribosomal protein L3

Chain S

60S ribosomal protein L16-A