IL_5Z3G_046

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

5Z3G|1|A|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_046 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.39

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5Z3G|1|A|U|3047
5Z3G|1|A|A|3048
5Z3G|1|A|A|3049
5Z3G|1|A|U|3050
5Z3G|1|A|U|3051
*
5Z3G|1|A|A|3091
5Z3G|1|A|C|3092
5Z3G|1|A|C|3093
5Z3G|1|A|A|3094

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3