IL_5ZLU_167

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAGUACG*UGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_167 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.367

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5ZLU|1|G|G|886
5ZLU|1|G|G|887
5ZLU|1|G|G|888
5ZLU|1|G|A|889
5ZLU|1|G|G|890
5ZLU|1|G|U|891
5ZLU|1|G|A|892
5ZLU|1|G|C|893
5ZLU|1|G|G|894
*
5ZLU|1|G|U|905
5ZLU|1|G|G|906
5ZLU|1|G|A|907
5ZLU|1|G|A|908
5ZLU|1|G|A|909
5ZLU|1|G|C|910
5ZLU|1|G|U|911

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12