IL_6AWD_034

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6AWD|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_034 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.304

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6AWD|1|A|U|684
6AWD|1|A|G|685
6AWD|1|A|U|686
6AWD|1|A|A|687
6AWD|1|A|G|688
*
6AWD|1|A|C|699
6AWD|1|A|G|700
6AWD|1|A|U|701
6AWD|1|A|A|702
6AWD|1|A|G|703
6AWD|1|A|A|704
6AWD|1|A|G|705
6AWD|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S11