IL_6AWD_063

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_063 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.3554

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6AWD|1|A|A|1430
6AWD|1|A|A|1431
6AWD|1|A|G|1432
6AWD|1|A|A|1433
6AWD|1|A|A|1434
6AWD|1|A|G|1435
*
6AWD|1|A|C|1466
6AWD|1|A|C|1467
6AWD|1|A|A|1468
6AWD|1|A|C|1469
6AWD|1|A|U|1470

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

30S ribosomal protein S20