IL_6AZ1_010

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAU*AA

Length

6 nucleotides

Bulged bases

6AZ1|1|1|A|112, 6AZ1|1|1|A|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_010 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.166

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6AZ1|1|1|U|111
6AZ1|1|1|A|112
6AZ1|1|1|A|113
6AZ1|1|1|U|114
*
6AZ1|1|1|A|344
6AZ1|1|1|A|345

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain E

ribosomal protein S4e

Chain K

ribosomal protein S8e

Chain U

ribosomal protein S17