IL_6AZ1_016
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUCAG*CGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6AZ1|1|1|U|357, 6AZ1|1|1|U|395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_016 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1251
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6AZ1|1|1|U|355
6AZ1|1|1|A|356
6AZ1|1|1|U|357
6AZ1|1|1|C|358
6AZ1|1|1|A|359
6AZ1|1|1|G|360
*
6AZ1|1|1|C|392
6AZ1|1|1|G|393
6AZ1|1|1|U|394
6AZ1|1|1|U|395
6AZ1|1|1|G|396
6AZ1|1|1|A|397
6AZ1|1|1|C|398
6AZ1|1|1|G|399
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain K
- ribosomal protein S8e
- Chain P
- ribosomal protein S12
- Chain U
- ribosomal protein S17
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