IL_6AZ1_026
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6AZ1|1|1|A|628, 6AZ1|1|1|U|630, 6AZ1|1|1|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_026 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1322
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|G|611
6AZ1|1|1|U|612
6AZ1|1|1|G|613
6AZ1|1|1|C|614
6AZ1|1|1|C|615
6AZ1|1|1|A|616
6AZ1|1|1|G|617
*
6AZ1|1|1|C|624
6AZ1|1|1|G|625
6AZ1|1|1|G|626
6AZ1|1|1|U|627
6AZ1|1|1|A|628
6AZ1|1|1|A|629
6AZ1|1|1|U|630
6AZ1|1|1|U|631
6AZ1|1|1|C|632
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 5
- mRNA
- Chain C
- ribosomal protein S3
- Chain P
- ribosomal protein S12
- Chain e
- ribosomal protein S30e
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