IL_6AZ1_028
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_028 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1021
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6AZ1|1|1|C|676
6AZ1|1|1|G|677
6AZ1|1|1|U|678
6AZ1|1|1|A|679
6AZ1|1|1|G|680
*
6AZ1|1|1|U|1215
6AZ1|1|1|C|1216
6AZ1|1|1|A|1217
6AZ1|1|1|A|1218
6AZ1|1|1|G|1219
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain J
- ribosomal protein S8
- Chain P
- ribosomal protein S12
- Chain T
- ribosomal protein S15
- Chain U
- ribosomal protein S17
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