IL_6AZ1_049
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6AZ1|1|1|C|1510, 6AZ1|1|1|C|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_049 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1324
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6AZ1|1|1|A|1509
6AZ1|1|1|C|1510
6AZ1|1|1|C|1511
6AZ1|1|1|A|1512
*
6AZ1|1|1|U|2037
6AZ1|1|1|C|2038
6AZ1|1|1|C|2039
6AZ1|1|1|C|2040
6AZ1|1|1|U|2041
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- Transfer RNA; tRNA
- Chain H
- ribosomal protein S7
- Chain L
- ribosomal protein S9
- Chain d
- ribosomal protein S28e
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