IL_6AZ1_083

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAAA*UGUGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_083 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.314

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6AZ1|1|1|U|951
6AZ1|1|1|U|952
6AZ1|1|1|U|953
6AZ1|1|1|A|954
6AZ1|1|1|A|955
6AZ1|1|1|A|956
*
6AZ1|1|1|U|979
6AZ1|1|1|G|980
6AZ1|1|1|U|981
6AZ1|1|1|G|982
6AZ1|1|1|C|983
6AZ1|1|1|G|984

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains