IL_6BOH_187

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6BOH|1|FB|A|532, 6BOH|1|FB|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_187 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2415

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6BOH|1|FB|G|515
6BOH|1|FB|PSU|516
6BOH|1|FB|G|517
6BOH|1|FB|C|518
6BOH|1|FB|C|519
6BOH|1|FB|A|520
6BOH|1|FB|G|521
*
6BOH|1|FB|C|528
6BOH|1|FB|G|529
6BOH|1|FB|G|530
6BOH|1|FB|U|531
6BOH|1|FB|A|532
6BOH|1|FB|A|533
6BOH|1|FB|U|534
6BOH|1|FB|A|535
6BOH|1|FB|C|536

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain MC

mRNA

Chain OC

Peptide chain release factor 1

Chain PC

Peptide chain release factor 1

Chain RC

30S ribosomal protein S3

Chain SC

50S ribosomal protein S4