IL_6BOH_342

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGG*UCAGCA

Length

9 nucleotides

Bulged bases

6BOH|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_342 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.2162

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6BOH|1|A|U|1056
6BOH|1|A|G|1057
6BOH|1|A|G|1058
*
6BOH|1|A|U|1199
6BOH|1|A|C|1200
6BOH|1|A|A|1201
6BOH|1|A|G|1202
6BOH|1|A|C|1203
6BOH|1|A|A|1204

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain MA

30S ribosomal protein S3

Chain TA

30S ribosomal protein S10

Chain XA

30S ribosomal protein S14 type Z