IL_6BOH_362
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGAGAG*UGGUCC
- Length
- 13 nucleotides
- Bulged bases
- 6BOH|1|FB|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOH_362 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3917
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6BOH|1|FB|G|660
6BOH|1|FB|G|661
6BOH|1|FB|G|662
6BOH|1|FB|A|663
6BOH|1|FB|G|664
6BOH|1|FB|A|665
6BOH|1|FB|G|666
*
6BOH|1|FB|U|740
6BOH|1|FB|G|741
6BOH|1|FB|G|742
6BOH|1|FB|U|743
6BOH|1|FB|C|744
6BOH|1|FB|C|745
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain DD
- 30S ribosomal protein S15
- Chain GD
- 30S ribosomal protein S18
- Chain UC
- 30S ribosomal protein S6
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