3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGGAGAG*UGGUCC
Length
13 nucleotides
Bulged bases
6BOH|1|FB|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_362 not in the Motif Atlas
Geometric match to IL_4EYA_005
Geometric discrepancy: 0.3917
The information below is about IL_4EYA_005
Detailed Annotation
Tandem non-canonical cWW pairs with near WC pairs
Broad Annotation
Tandem non-canonical cWW pairs with near WC pairs
Motif group
IL_82292.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
3

Unit IDs

6BOH|1|FB|G|660
6BOH|1|FB|G|661
6BOH|1|FB|G|662
6BOH|1|FB|A|663
6BOH|1|FB|G|664
6BOH|1|FB|A|665
6BOH|1|FB|G|666
*
6BOH|1|FB|U|740
6BOH|1|FB|G|741
6BOH|1|FB|G|742
6BOH|1|FB|U|743
6BOH|1|FB|C|744
6BOH|1|FB|C|745

Current chains

Chain FB
16S ribosomal RNA

Nearby chains

Chain DD
30S ribosomal protein S15
Chain GD
30S ribosomal protein S18
Chain UC
30S ribosomal protein S6

Coloring options:


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