IL_6BY1_035

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6BY1|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_035 not in the Motif Atlas

Geometric match to IL_7A0S_004

Geometric discrepancy: 0.29

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6BY1|1|AA|U|684
6BY1|1|AA|G|685
6BY1|1|AA|U|686
6BY1|1|AA|A|687
6BY1|1|AA|G|688
*
6BY1|1|AA|C|699
6BY1|1|AA|G|700
6BY1|1|AA|U|701
6BY1|1|AA|A|702
6BY1|1|AA|G|703
6BY1|1|AA|A|704
6BY1|1|AA|G|705
6BY1|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain CA

Large subunit ribosomal RNA; LSU rRNA