IL_6BY1_093

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

6BY1|1|BA|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_093 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.1564

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6BY1|1|BA|U|605
6BY1|1|BA|G|606
6BY1|1|BA|A|607
6BY1|1|BA|A|608
6BY1|1|BA|A|609
6BY1|1|BA|U|610
6BY1|1|BA|C|611
6BY1|1|BA|C|612
*
6BY1|1|BA|G|628
6BY1|1|BA|A|629
6BY1|1|BA|A|630
6BY1|1|BA|C|631
6BY1|1|BA|U|632
6BY1|1|BA|G|633

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BH

30S ribosomal protein S8

Chain BP

30S ribosomal protein S16