IL_6BY1_205

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

6BY1|1|CA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_205 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.182

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6BY1|1|CA|A|2070
6BY1|1|CA|A|2071
*
6BY1|1|CA|U|2438
6BY1|1|CA|A|2439
6BY1|1|CA|C|2440
6BY1|1|CA|U|2441

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain CC

50S ribosomal protein L2