IL_6BY1_313

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6BY1|1|DA|A|1938, 6BY1|1|DA|U|1944, 6BY1|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_313 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.2004

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6BY1|1|DA|C|1934
6BY1|1|DA|G|1935
6BY1|1|DA|A|1936
6BY1|1|DA|A|1937
6BY1|1|DA|A|1938
6BY1|1|DA|U|1939
6BY1|1|DA|U|1940
6BY1|1|DA|C|1941
6BY1|1|DA|C|1942
6BY1|1|DA|U|1943
6BY1|1|DA|U|1944
6BY1|1|DA|G|1945
*
6BY1|1|DA|C|1961
6BY1|1|DA|C|1962
6BY1|1|DA|U|1963
6BY1|1|DA|G|1964

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Transfer RNA; tRNA

Chain DC

50S ribosomal protein L2