IL_6BY1_336

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_336 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1861

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6BY1|1|DA|U|2680
6BY1|1|DA|C|2681
6BY1|1|DA|A|2682
6BY1|1|DA|C|2683
6BY1|1|DA|U|2684
*
6BY1|1|DA|A|2725
6BY1|1|DA|A|2726
6BY1|1|DA|A|2727

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L14

Chain DP

50S ribosomal protein L19