IL_6BY1_379

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGAGC*GUUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_379 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.451

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6BY1|1|CA|U|2099
6BY1|1|CA|G|2100
6BY1|1|CA|A|2101
6BY1|1|CA|G|2102
6BY1|1|CA|C|2103
*
6BY1|1|CA|G|2186
6BY1|1|CA|U|2187
6BY1|1|CA|U|2188
6BY1|1|CA|U|2189
6BY1|1|CA|G|2190

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L9