IL_6BY1_403

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGCG*CGUAG

Length

9 nucleotides

Bulged bases

6BY1|1|DB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_403 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3678

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6BY1|1|DB|C|17
6BY1|1|DB|G|18
6BY1|1|DB|C|19
6BY1|1|DB|G|20
*
6BY1|1|DB|C|63
6BY1|1|DB|G|64
6BY1|1|DB|U|65
6BY1|1|DB|A|66
6BY1|1|DB|G|67

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DF

50S ribosomal protein L5