IL_6CB1_037
3D structure
- PDB id
- 6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GGAU*GUUUUC
- Length
- 10 nucleotides
- Bulged bases
- 6CB1|1|1|U|1820, 6CB1|1|1|U|1821
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CB1_037 not in the Motif Atlas
- Homologous match to IL_5TBW_065
- Geometric discrepancy: 0.3364
- The information below is about IL_5TBW_065
- Detailed Annotation
- Multiple bulged bases with near cWW
- Broad Annotation
- Multiple bulged bases with near cWW
- Motif group
- IL_58686.2
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
6CB1|1|1|G|1623
6CB1|1|1|G|1624
6CB1|1|1|A|1625
6CB1|1|1|U|1626
*
6CB1|1|1|G|1817
6CB1|1|1|U|1818
6CB1|1|1|U|1819
6CB1|1|1|U|1820
6CB1|1|1|U|1821
6CB1|1|1|C|1822
Current chains
- Chain 1
- 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34-A
- Chain s
- Ribosome biogenesis protein ERB1
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