3D structure

PDB id
6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
UCUUC*GGAAUA
Length
11 nucleotides
Bulged bases
6CB1|1|1|U|1629
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CB1_038 not in the Motif Atlas
Homologous match to IL_8C3A_072
Geometric discrepancy: 0.1683
The information below is about IL_8C3A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_48431.1
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6CB1|1|1|U|1627
6CB1|1|1|C|1628
6CB1|1|1|U|1629
6CB1|1|1|U|1630
6CB1|1|1|C|1631
*
6CB1|1|1|G|1811
6CB1|1|1|G|1812
6CB1|1|1|A|1813
6CB1|1|1|A|1814
6CB1|1|1|U|1815
6CB1|1|1|A|1816

Current chains

Chain 1
35S pre-ribosomal RNA miscRNA

Nearby chains

Chain Z
60S ribosomal protein L27-A
Chain s
Ribosome biogenesis protein ERB1
Chain t
Ribosome biogenesis protein RLP7

Coloring options:


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