IL_6D90_015

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6D90|1|2|U|305, 6D90|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_015 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3978

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6D90|1|2|C|216
6D90|1|2|A|217
6D90|1|2|U|218
6D90|1|2|U|219
*
6D90|1|2|A|302
6D90|1|2|C|303
6D90|1|2|C|304
6D90|1|2|U|305
6D90|1|2|C|306
6D90|1|2|G|307
6D90|1|2|G|308
6D90|1|2|G|309

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain JJ

eS8