IL_6D90_025

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6D90|1|2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_025 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1362

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6D90|1|2|C|491
6D90|1|2|C|492
6D90|1|2|A|493
6D90|1|2|C|494
6D90|1|2|U|495
6D90|1|2|C|496
*
6D90|1|2|G|506
6D90|1|2|G|507
6D90|1|2|A|508
6D90|1|2|G|509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain KK

uS4

Chain ZZ

eS24