IL_6D90_040
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUG*CUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_040 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2976
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6D90|1|2|U|804
6D90|1|2|U|805
6D90|1|2|U|806
6D90|1|2|G|807
*
6D90|1|2|C|856
6D90|1|2|U|857
6D90|1|2|A|858
6D90|1|2|G|859
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain FF
- eS4
- Chain II
- eS7
- Chain MM
- uS17
- Chain XX
- uS8
Coloring options: