IL_6D90_074
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 6D90|1|2|A|1580, 6D90|1|2|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_074 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2683
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6D90|1|2|G|1550
6D90|1|2|U|1551
6D90|1|2|G|1552
6D90|1|2|C|1553
6D90|1|2|C|1554
6D90|1|2|U|1555
6D90|1|2|A|1556
6D90|1|2|C|1557
6D90|1|2|C|1558
*
6D90|1|2|G|1577
6D90|1|2|U|1578
6D90|1|2|A|1579
6D90|1|2|A|1580
6D90|1|2|C|1581
6D90|1|2|C|1582
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain EE
- uS3
- Chain LL
- eS10
- Chain VV
- uS10
- Chain ee
- eS29
Coloring options: