IL_6D90_079
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUC*GUCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_079 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2805
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6D90|1|2|C|1705
6D90|1|2|G|1706
6D90|1|2|U|1707
6D90|1|2|C|1708
*
6D90|1|2|G|1826
6D90|1|2|U|1827
6D90|1|2|C|1828
6D90|1|2|G|1829
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain jj
- eRF1
- Chain n
- eL41
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