IL_6D90_099
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_099 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1331
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6D90|1|5|C|81
6D90|1|5|U|82
6D90|1|5|C|83
6D90|1|5|A|84
6D90|1|5|G|85
6D90|1|5|U|86
6D90|1|5|A|87
6D90|1|5|A|88
*
6D90|1|5|U|96
6D90|1|5|G|97
6D90|1|5|A|98
6D90|1|5|A|99
6D90|1|5|C|100
6D90|1|5|A|101
6D90|1|5|G|102
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain Q
- rL18
- Chain a
- uL15
Coloring options: