IL_6D9J_006

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCUAAG*CUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_006 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.3834

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6D9J|1|2|G|56
6D9J|1|2|U|57
6D9J|1|2|C|58
6D9J|1|2|U|59
6D9J|1|2|A|60
6D9J|1|2|A|61
6D9J|1|2|G|62
*
6D9J|1|2|C|86
6D9J|1|2|U|87
6D9J|1|2|G|88
6D9J|1|2|C|89

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain ZZ

eS24