IL_6D9J_020
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6D9J|1|2|U|361, 6D9J|1|2|C|399
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_020 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.2122
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6D9J|1|2|U|359
6D9J|1|2|A|360
6D9J|1|2|U|361
6D9J|1|2|C|362
6D9J|1|2|A|363
6D9J|1|2|A|364
*
6D9J|1|2|U|396
6D9J|1|2|G|397
6D9J|1|2|A|398
6D9J|1|2|C|399
6D9J|1|2|C|400
6D9J|1|2|A|401
6D9J|1|2|C|402
6D9J|1|2|G|403
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain JJ
- eS8
- Chain MM
- uS17
- Chain YY
- uS12
Coloring options: